Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs11984027 chr7:6187775 C/T 0 175 15.4 15.57 1.03 KM Plot
PAAD rs12024208 chr1:162831722 C/T 1.07E-5 177 15.43 16.27 6.5 KM Plot
PAAD rs12033825 chr1:36600311 C/T 0.000164 177 17.83 12.2 16.27 KM Plot
PAAD rs12039350 chr1:33723897 C/G 0.000154 176 15.38 16.37 4.52 KM Plot
PAAD rs12040602 chr1:114855734 A/G 0 174 0.4 15.27 15.57 KM Plot
PAAD rs12055550 chr6:159738005 G/A 6.57E-8 177 15.48 21.15 3.17 KM Plot
PAAD rs12063905 chr1:16242620 C/A 1.68E-6 178 15.67 12.88 3.43 KM Plot
PAAD rs12077944 chr1:16228007 T/C 1.67E-6 178 15.57 14.57 3.43 KM Plot
PAAD rs12078572 chr1:16229597 A/T 1.68E-6 178 15.67 12.88 3.43 KM Plot
PAAD rs12096473 chr1:248016894 C/T 6.06E-5 173 15.48 15.13 4.93 KM Plot
PAAD rs12142516 chr1:230867056 C/T 9.19E-5 173 15.57 14.67 3.9 KM Plot
PAAD rs12151238 chr19:49368613 T/C 7.3E-13 176 16.28 12.6 1.37 KM Plot
PAAD rs12185079 chr15:100271253 C/T 5.73E-5 173 15.53 16.05 5.82 KM Plot
PAAD rs12191518 chr6:44898166 G/A 9.64E-5 178 16.22 16.12 11.98 KM Plot
PAAD rs12199720 chr6:45307443 C/T 0.000164 173 12.2 16.1 16.48 KM Plot